rs27557260 SNP Detail

Summary

• ID
  rs27557260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132780691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGGAAA GGCAGAGGTA
  GGAGGTAGGC AGTGCTGATC TGCAGTGACA CCAGCGCCTA CAGTCACAGG CCTGGAGATT
  GGAAACCTGC AGGGACAGCA GAGGATAAGC CACCCGCCCC CACCCTGCTG CCGAACACAT
  CCAAAGAGCT CCGAGGCAGG CAGGGGCTGG TCTGGCTCCT GACACAGTGA GATTCAGTGA
  R
  CCAGGTGCAG TATGTACACA CAGATACACT CACAGCTGGG CACACCTGTC ACGGGCTCAG
  CCAAATACAC AGAGAAGTGA ACAGAATAGA AATCTAGATG GTGGGCGTGT CCACGATTAT
  AAACTGAAGA CACTTAATTC TGGTAGATAC GTAGACTCAG CTGATAATAC CAATCACTAC
  TGATCAAACT CAGGATCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756986	NES09160304	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		A	A	A		A
ss321338382	CHEV_4_132609295	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557260					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756986	NES09160304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132780691 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			636 bp upstream
Rr601173	regulatory region 601173			1682 bp proximal
Tssr39445	transcription start site region 39445			1720 bp upstream