rs27557259 SNP Detail

Summary

• ID
  rs27557259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132780743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCCTACA GTCACAGGCC
  TGGAGATTGG AAACCTGCAG GGACAGCAGA GGATAAGCCA CCCGCCCCCA CCCTGCTGCC
  GAACACATCC AAAGAGCTCC GAGGCAGGCA GGGGCTGGTC TGGCTCCTGA CACAGTGAGA
  TTCAGTGAAC CAGGTGCAGT ATGTACACAC AGATACACTC ACAGCTGGGC ACACCTGTCA
  Y
  GGGCTCAGCC AAATACACAG AGAAGTGAAC AGAATAGAAA TCTAGATGGT GGGCGTGTCC
  ACGATTATAA ACTGAAGACA CTTAATTCTG GTAGATACGT AGACTCAGCT GATAATACCA
  ATCACTACTG ATCAAACTCA GGATCCATGT GTGAACTGTA TTCATTTCTC TGTGGTGCTG
  GGAGTGGAAC CCGGGATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756985	NES09160306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T		T	C	C	C		C
ss321338384	CHEV_4_132609347	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557259					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756985	NES09160306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132780743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			584 bp upstream
Rr601173	regulatory region 601173			1630 bp proximal
Tssr39445	transcription start site region 39445			1668 bp upstream