rs27557256 SNP Detail

Summary

• ID
  rs27557256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132781439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGCCAT GGTTATTAAA
  GAAACCAGAC GGGGTGGTGG TGCACACTTC AAAGCCTAGC TCTAGGAAGA CAGAGGCAGG
  TGGATCTCTA GGCTAGCCTG GTCTGCAGAA TGAGTTCCAG AACAGTTAGG GGGACCTAAA
  CAAACCCTGT ATCTAAAAAC AAGAGCTATA TCCAGTTGCT GCTGGCATTG GGCAGGTGCC
  R
  GCTCCACATA CACCTCCATG GCAGTGGGCA CACCTTCCTC TTCCTCTAGG GACAGCGACT
  CAGACTTGTA CAGTTACCAG CCCCAGAGCT GTCTCTCTGC TTCATAAGAT GTCACTCCTC
  ATTTTTAGGG GTGAGAAAAT GGGGAAGAAT ATATAGGCTG TAGACAGGAT AAGGAGTTGA
  GCCAAGGCCA GGTTCCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756982	NES09160251	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G		G	A	A		A
ss321338390	CHEV_4_132610043	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557256					SNP	A	A	A	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756982	NES09160251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132781439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			934 bp proximal
Tssr39445	transcription start site region 39445			972 bp upstream