rs27557255 SNP Detail

Summary

• ID
  rs27557255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132781449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATTAAA GAAACCAGAC
  GGGGTGGTGG TGCACACTTC AAAGCCTAGC TCTAGGAAGA CAGAGGCAGG TGGATCTCTA
  GGCTAGCCTG GTCTGCAGAA TGAGTTCCAG AACAGTTAGG GGGACCTAAA CAAACCCTGT
  ATCTAAAAAC AAGAGCTATA TCCAGTTGCT GCTGGCATTG GGCAGGTGCC AGCTCCACAT
  R
  CACCTCCATG GCAGTGGGCA CACCTTCCTC TTCCTCTAGG GACAGCGACT CAGACTTGTA
  CAGTTACCAG CCCCAGAGCT GTCTCTCTGC TTCATAAGAT GTCACTCCTC ATTTTTAGGG
  GTGAGAAAAT GGGGAAGAAT ATATAGGCTG TAGACAGGAT AAGGAGTTGA GCCAAGGCCA
  GGTTCCCTCC ACTTTCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756981	NES09160252	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A		G	A	A	A		A
ss321338391	CHEV_4_132610053	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557255					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756981	NES09160252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132781449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			924 bp proximal
Tssr39445	transcription start site region 39445			962 bp upstream