rs27557254 SNP Detail

Summary

• ID
  rs27557254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132781476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAAACCC TGTATCTAAA AACAAGAGCT ATATCCAGTT
  GCTGCTGGCA TTGGGCAGGT GCCAGCTCCA CATACACCTC CATGGCAGTG GGCACACCTT
  Y
  CTCTTCCTCT AGGGACAGCG ACTCAGACTT GTACAGTTAC CAGCCCCAGA GCTGTCTCTC
  TGCTTCATAA GATGTCACTC CTCATTTTTA GGGGTGAGAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	PWD/PhJ
ss37756980	NES09160253	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	PWD/PhJ
rs27557254					SNP	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756980	NES09160253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132781476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			897 bp proximal
Tssr39445	transcription start site region 39445			935 bp upstream