rs27557242 SNP Detail

Summary

• ID
  rs27557242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132785525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GCCTCTGCCT CCCAAATGCA
  Y
  ACCCTTGCCT GGCTGCCTCC ACACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756968	NES09160136	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C	C	T		C	C	C	C		C
ss45615283	mCV22584541	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				T		C
ss147480847	ENSMUSSNP5463551	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321338415	CHEV_4_132614129	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557242					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756968	NES09160136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132785525 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Gm68631	predicted gene, 68631			1586 bp downstream
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			1195 bp distal
Rr601174	regulatory region 601174			1653 bp distal
Rr601175	regulatory region 601175			1085 bp distal
Rr601176	regulatory region 601176			within coordinates
Rr601177	regulatory region 601177			558 bp proximal