rs27557239 SNP Detail

Summary

• ID
  rs27557239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132786078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG TGGTACAGGT CCACAGCCAG
  R
  CATGAGAGAG AGCCTTGAGT TAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756965	NES09160124	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	A		A	G	G	G		G
ss45577457	mCV22584335	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		G
ss147480870	ENSMUSSNP1978962	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321338419	CHEV_4_132614682	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557239					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756965	NES09160124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132786078 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Gm68631	predicted gene, 68631			1033 bp downstream
Rr377217	regulatory region 377217			341 bp downstream
Rr601173	regulatory region 601173			1748 bp distal
Rr601175	regulatory region 601175			1638 bp distal
Rr601176	regulatory region 601176			161 bp distal
Rr601177	regulatory region 601177			5 bp proximal