rs27556756 SNP Detail

Summary

• ID
  rs27556756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGTCATCA GCGGGTAGCT AGACTTGTCT
  TGTACTGTTT TCAGCAATCA TGAAGCACAC GGAGCATTTA ACTTGTCCAC ATTACCTATA
  GGAATCTGAG TCCAAAACCT CCAGGAAAGA TCTACCTCCC ATTCCTCAAT ATagctgagc
  Y
  tggcggccca cgcctggaaa cctagctcct ggggaggctg aggcaggcag atcataagtt
  caaaggccag ttggagagtt tagtgaaacc ctatTCCCCA GTTCCAAAAT GAAAAGTACA
  GAGATGAGGg gagctggaga gacagctcag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758814	NES09152394	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T		T	C	C	C		C
ss321333987	CHEV_4_132073444	CHEVERUD	SCREENING_POP	f	SNP						C					T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27556756					SNP	C	C	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758814	NES09152394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244840 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	1450 bp downstream
Rr377207	regulatory region 377207	1214 bp downstream
Rr600998	regulatory region 600998	1501 bp distal
Rr600999	regulatory region 600999	245 bp proximal
Tssr39372	transcription start site region 39372	1701 bp downstream