rs27556729 SNP Detail

Summary

• ID
  rs27556729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132252115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGCTTCC CCCACGCATC GCCGTTGGAT
  TACTGCCCAC ATTTTTGACT AATCCTTTTT TTAACCAGGA Ctctttccca gtaggccgtg
  gattccataa gaaaaggagc tgtcgctatt ttgtagctgg atctccagtg aacactgcgc
  R
  cccagcatac agtagatacc aatagcaact ttgctggaca aaAGTTTAAA GGAACTTAAA
  AGGCTGACTT GTACCGCagc acatcgccta aacaagcccg ctgaaagctt tgggttcagg
  cccaagcttg gcataaaact gaatgtgctg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758769	NES09152207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		A	G	G	G		G
ss321334092	CHEV_4_132080719	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27556729					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758769	NES09152207	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132252115 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	within coordinates
Rr601000	regulatory region 601000	within coordinates
Rr601001	regulatory region 601001	1976 bp proximal