rs27556725 SNP Detail

Summary

• ID
  rs27556725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132253987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGTGT TTGCTACTAC
  CGACAGCTAT TTTTGTTTCT TCTTTGATTA AAAATATATT TGTTTAATAG CCAGATGTGG
  TGGTATAACC ATTAATTCCA GCACTCAGGA AGCAGAGGCA GGTGGAGCTC TATGAAGCTG
  AGGCCAGCCT GGTCTACAGA GCACGTTCCA GGACAGCCAG GGCTGCACAG AGAAACCCTA
  Y
  GTTGAAACAT CAAATATAGT AATAAGATTG TATATGTATG AGTCTTTTGG TGTTTGCCTG
  CATGTATGTA TACCACATCC ATGCTTGGTG CCTTTGTCCC TGGATCTCCT GGAACTGGAG
  TTACAAGCAG CTATGAGCCA TCCTGTGGGA GCTAGGAACC GAACACAGCA AATGCTCAAC
  TGCCGAGCCA TCTCTCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758762	NES09152106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	T	T		C
ss321334117	CHEV_4_132082591	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27556725					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758762	NES09152106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132253987 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	1256 bp downstream
Rr377209	regulatory region 377209	472 bp upstream
Rr601000	regulatory region 601000	1517 bp distal
Rr601001	regulatory region 601001	104 bp proximal
Rr601002	regulatory region 601002	196 bp proximal