rs27556718 SNP Detail

Summary

• ID
  rs27556718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132254626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGCAGAA GATATCTTTC
  CTCATTCTCT TAATTGCTTT GTATTTTTTT GTTTTGAGAC AGGGTCTCTC ATTGTACCGA
  ATGCTTATGG ATTACGCTAG GCTGATGGCT GATGACTAAG CAGCTTTGGA GATCCTCCTG
  CCTCCAGCTC CCTTTGCCCC CCTCCAGACT AGTTACAGGT CCTCATGTGG ATACAGAGGG
  Y
  ACTTTATTGT CTGAGCCATC TCTTCAGCCA TACATTTGGA TTTAATTGGT CCTAAGATAA
  TGTTGATTCT CCTCTTCTTC CTCCCCACCC TTCCCCAACT TCTCTTCCCA GGCTGGGACT
  CAAACCCAGG AACTATTCAA GTGTTTGACC AGTGGGGTAG ACTTTTTGTT TGTTTGTTTG
  TTTTTCAAGA CAGGGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758754	NES09152072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27556718					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758754	NES09152072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132254626 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	1895 bp downstream
Rr377209	regulatory region 377209	within coordinates
Rr601001	regulatory region 601001	320 bp distal
Rr601002	regulatory region 601002	422 bp distal
Rr601003	regulatory region 601003	1960 bp proximal