rs27556266 SNP Detail

Summary

• ID
  rs27556266
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141021758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA GTGATCCATG CAAAGAGGAC
  W
  GGAAGTGTGC CAGAGCCGGT AAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NZW/LacJ
ss37786593	NES09124875	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T			T	T
ss45685773	mCV24074682	ABI	CRAMUS_MOUSE	f	SNP		A	T					T	A
ss147731015	ENSMUSSNP7120014	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NZW/LacJ
rs27556266					SNP	A	A	T	T	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786593	NES09124875	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141021758 () rs orientation: forward

Symbol	Name	Function Class
Rr377305	regulatory region 377305	1821 bp downstream
Rr603718	regulatory region 603718	1888 bp distal
Rr603719	regulatory region 603719	1178 bp proximal
Tssr40046	transcription start site region 40046	1816 bp upstream