rs27556264 SNP Detail

Summary

• ID
  rs27556264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141023135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCACTTC TCACAGGTTT
  TGGATGATGC AGGGTGGCAC AAGGCTTTCC TGGCACATGG CCGAGTCATA ATCTCACGTG
  AGCTCCTCTT TTGCTTTGAC AGCTCATGAT GAAGCTGAGT CTGGCCTCGA ACTCGTGGAC
  TTGCAGCCCT GAGCAACCAT GCCTGGCTTG GCTTTACTGT TAAAAATACT TCTCTGTAGG
  M
  CCGACACTCT GATCCTTGAG CAAAGGCCTG GGGTGGACCG GAAAGTAAGG GATCTGTGAT
  CCAAGCCCAG CTGGAGGGCC AGGAGGATGT GGACAGATGG GGGTGGGAAG GCCCAGCGGA
  ATGAGGGGCT GGGGCTGGGG GAGGGGGCTG AGAAACCAGA CTGGAGGTGG GCGGAAGGCA
  CCCCGGTGAC CCCGGGGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ
ss37786591	NES09124844	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ
rs27556264					SNP	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786591	NES09124844	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141023135 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	within coordinates
Tssr40046	transcription start site region 40046	439 bp upstream