rs27556263 SNP Detail

Summary

• ID
  rs27556263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141023843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG ATCTTCCAGC CTAAGGGAGA
  R
  AGAGTGCTAT CCTATCGTAT ACCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ
ss37786590	NES09124826	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G		A	A
ss45590319	mCV24977055	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss147731037	ENSMUSSNP1500559	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ
rs27556263					SNP	G	A	A	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786590	NES09124826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141023843 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	within coordinates
Rr603720	regulatory region 603720	1352 bp proximal
Tssr40046	transcription start site region 40046	265 bp downstream