rs27556261 SNP Detail

Summary

• ID
  rs27556261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141024632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAAATA AAAAAGAAGC
  TAGGTAGAGG CGGGTGGGGT GCATGTCTTT AATCCTAGAC TCAGAAGGCA GAAGCAGGCA
  GATCTCAGAG TTGGAGGCCA GCCTGGTCTC AGAGAGAGTT CCAGGACATC CTGGGCTACA
  CAGAGAAACC CTGTCTTAAA ACAAAATTAA ACCATGAGCG TTTGTGAAAT GACTCCTGTA
  Y
  GCAGTCACTT TTCTCTTGGA CTCAGGGATG CATATGCGTC ATATTTAACT CCTGCCTCAG
  GAGACAGTTA GAGGTTCAGG AATCTGAGAA AGAGTTCCTT TGGCCCAGTT GAAGATCTTC
  ATTGTTTCAG GAGGACTCAG AGGCTTAGGA AACGACCTGT CCCCGGAAGG CACTGAGGGA
  CAGTCATTTC AGCGACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37786588	NES09124764	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27556261					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786588	NES09124764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141024632 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	745 bp distal
Rr603720	regulatory region 603720	563 bp proximal
Rr603721	regulatory region 603721	1949 bp proximal
Tssr40046	transcription start site region 40046	1054 bp downstream