rs27556260 SNP Detail

Summary

• ID
  rs27556260
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141024665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT CTCTTGGACT CAGGGATGCA
  K
  ATGCGTCATA TTTAACTCCT GCCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37786587	NES09124767	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		G	G	G	T
ss45575456	mCV24977057	ABI	CRAMUS_MOUSE	f	SNP		G	T					T	G
ss147731044	ENSMUSSNP229477	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27556260					SNP	G	G	T	T	T	G	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786587	NES09124767	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141024665 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	778 bp distal
Rr603720	regulatory region 603720	530 bp proximal
Rr603721	regulatory region 603721	1916 bp proximal
Tssr40046	transcription start site region 40046	1087 bp downstream