rs27556259 SNP Detail

Summary

• ID
  rs27556259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141024919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAGTT CCTTTGGCCC
  AGTTGAAGAT CTTCATTGTT TCAGGAGGAC TCAGAGGCTT AGGAAACGAC CTGTCCCCGG
  AAGGCACTGA GGGACAGTCA TTTCAGCGAC CTGGAAGTTC TGGTTGCAGA GAGCAGATCC
  GTCATTCCAG GTGGAGGGGC TGTGGGATTC AGAGGCAGGA GAAGGGTATC TGCTGGGTCC
  R
  AGCTGGCTGA GATCCAGTCT TCCACCTCCC CGAGCTCACT TCTTCCACAT GCACTCATAA
  GGTGGACGTC AGCACGACAA AATCTTAGTA CTGAGCCTGG CCCGTAGTAG TAAGCCCTTC
  GGTCCCAGAT AGCTCCAATC GTCATCCTAT TTGATTGCAT CTGGCTCTTG ACCAAAGGCA
  GATGCAGATC AAAGCTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ
ss37786586	NES09124769	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ
rs27556259					SNP	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786586	NES09124769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141024919 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	1032 bp distal
Rr603720	regulatory region 603720	276 bp proximal
Rr603721	regulatory region 603721	1662 bp proximal
Tssr40046	transcription start site region 40046	1341 bp downstream