rs27556258 SNP Detail

Summary

• ID
  rs27556258
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141025039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGCAGA GAGCAGATCC
  GTCATTCCAG GTGGAGGGGC TGTGGGATTC AGAGGCAGGA GAAGGGTATC TGCTGGGTCC
  GAGCTGGCTG AGATCCAGTC TTCCACCTCC CCGAGCTCAC TTCTTCCACA TGCACTCATA
  AGGTGGACGT CAGCACGACA AAATCTTAGT ACTGAGCCTG GCCCGTAGTA GTAAGCCCTT
  M
  GGTCCCAGAT AGCTCCAATC GTCATCCTAT TTGATTGCAT CTGGCTCTTG ACCAAAGGCA
  GATGCAGATC AAAGCTGGGT AGAGAAACGG AGGCGTCAAC ATTCTTGTGG GTGGTCCGCC
  TGTGCCCAGC CTGAAGCAGA GCCTAGCCAA GGTGGGCACC TGAGCCAGCA GGTGAGCTGG
  CAGGCTCTCT CTCTCTGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37786585	NES09124772	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	C	C	C	C
ss147731049	ENSMUSSNP3437881	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27556258					SNP	A	A	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786585	NES09124772	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141025039 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	1152 bp distal
Rr603720	regulatory region 603720	156 bp proximal
Rr603721	regulatory region 603721	1542 bp proximal
Tssr40046	transcription start site region 40046	1461 bp downstream