rs27552460 SNP Detail

Summary

• ID
  rs27552460
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141788182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CCTATCCAGC AGGACTTCAG
  S
  CAGGCCACCG GGAGTCTCAG GCCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37783685	NES09130492	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C	C	C		G	C	C	C		C
ss321392294	CHEV_4_141616786	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552460					SNP	C	C	G	C	C	G	C	C	C	C	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783685	NES09130492	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141788182 () rs orientation: forward

Symbol	Name	Function Class
D4Mit128	DNA segment, Chr 4, Massachusetts Institute of Technology 128	1739 bp distal
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	1520 bp proximal
Rr603976	regulatory region 603976	within coordinates
Rr603977	regulatory region 603977	1902 bp proximal
Tmem51	transmembrane protein 51	Intron