rs27552459 SNP Detail

Summary

• ID
  rs27552459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141788253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACAGCTGC CTATCCAGCA GGACTTCAGC CAGGCCACCG
  GGAGTCTCAG GCCACGGGGA GTCTCAGGAC ATCACAGGAT CTGATGGTTA CCTCAGCTGA
  R
  TCCCAACACC CTTTGTGAGG GAGGTGTTCC AGGCCAGGCA AAGAGCTCAG CTTCTGCACA
  TAAAAGGAGG CCCTGGGAGT CACTCTCTTG CTTCTCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783684	NES09130493	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	A	A	G	G	G	A	G	A	A
ss45714304	mCV24078890	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147747811	ENSMUSSNP7115128	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552459					SNP	A	A	G	G	G	A	G	A	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783684	NES09130493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141788253 () rs orientation: forward

Symbol	Name	Function Class
D4Mit128	DNA segment, Chr 4, Massachusetts Institute of Technology 128	1810 bp distal
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	1449 bp proximal
Rr603976	regulatory region 603976	within coordinates
Rr603977	regulatory region 603977	1831 bp proximal
Tmem51	transmembrane protein 51	Intron