rs27552458 SNP Detail

Summary

• ID
  rs27552458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141788362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATCCAGC AGGACTTCAG
  CCAGGCCACC GGGAGTCTCA GGCCACGGGG AGTCTCAGGA CATCACAGGA TCTGATGGTT
  ACCTCAGCTG AGTCCCAACA CCCTTTGTGA GGGAGGTGTT CCAGGCCAGG CAAAGAGCTC
  AGCTTCTGCA CATAAAAGGA GGCCCTGGGA GTCACTCTCT TGCTTCTCTT TGGTCTCCAC
  Y
  TCTTTCCTGC ATCTCTCCCA AGTCTCAGCT TTCGCCCACC TCCCCTAAAC AGCTCTGAAT
  GGCCTGTGTA TTCAGGGCTT CACCACTCCA TGATGGCTCC GCCCAAGAGC CTGGGCGGCT
  CAGCTGGGAG ACCTGAGGAG GTCTGTATTA CTTCTCCAGC TGCTGCTGTA AATACCTCAT
  AAAAGCATCT TAAGGAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783683	NES09130494	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552458					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783683	NES09130494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141788362 () rs orientation: forward

Symbol	Name	Function Class
D4Mit128	DNA segment, Chr 4, Massachusetts Institute of Technology 128	1919 bp distal
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	1340 bp proximal
Rr603976	regulatory region 603976	within coordinates
Rr603977	regulatory region 603977	1722 bp proximal
Tmem51	transmembrane protein 51	Intron