rs27552452 SNP Detail

Summary

• ID
  rs27552452
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141789695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGAGTTT GTGTTGTTAA AACTGATGCC ACATGTGGTT
  GACACATGCC AGCATTTCGG AGGTGAAAGC AGTAGTTCAA GGGCAGCTTT GACTGCTATT
  W
  TAATTTAAAG ACAAACTGGG CTGCATCACA CACACACACA TACACACACA CACACACACA
  CACACACTTC ACCACCACTA CCACCACCAC CAACCTCAAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783677	NES09130410	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552452					SNP	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783677	NES09130410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141789695 () rs orientation: forward

Symbol	Name	Function Class
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	7 bp proximal
Rr603976	regulatory region 603976	944 bp distal
Rr603977	regulatory region 603977	389 bp proximal
Tmem51	transmembrane protein 51	Intron