rs27552451 SNP Detail

Summary

• ID
  rs27552451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141789886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT GTCCCATAAA GAATGGAGTA
  Y
  GGTGGCTCAG TTGTCCCTAG GTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37783676	NES09130411	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	T	T	T		C	T	T	T		T
ss147747858	ENSMUSSNP877605	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss321392308	CHEV_4_141618490	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552451					SNP	C	C	T	C	T	C	T	T	T	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783676	NES09130411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141789886 () rs orientation: forward

Symbol	Name	Function Class
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	81 bp distal
Rr603976	regulatory region 603976	1135 bp distal
Rr603977	regulatory region 603977	198 bp proximal
Tmem51	transmembrane protein 51	Intron