rs27552448 SNP Detail

Summary

• ID
  rs27552448
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141789961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCACCAC CACTACCACC
  ACCACCAACC TCAAAACATG GAAAGTGAGC ACACCAGAGT GTGCTCCACA CAACCATCTA
  TTTTATGATT AGACAAAATG ATCTTGTCCC ATAAAGAATG GAGTATGGTG GCTCAGTTGT
  CCCTAGGTCT TGGGTGTCCT AGGGACTCTG GACTCCCTTG TGTTCTTTCC CCGATGCTGA
  K
  CAGGGGATAC TGAAGATGAA GGCGGGGCTG AGTGGAAAGG TCAGGGTGCT GGTTCCTTCC
  ACCCGAGCCC CTGGGTTCCA GATGAAGAGG CCAGGACCTA AGGGGATCAT GTATCTCACC
  AGAGCAAACA CCCGAGACTC AAGGCTGCGG CTACCATGAT GGGAGGGGCT GTGGGGTCAA
  TATTTCCATC TGAGTGTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783673	NES09130414	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G	G	G	G	G	G	G	G	G	G
ss147747873	ENSMUSSNP3876143	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27552448					SNP	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783673	NES09130414	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141789961 () rs orientation: forward

Symbol	Name	Function Class
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	156 bp distal
Rr603976	regulatory region 603976	1210 bp distal
Rr603977	regulatory region 603977	123 bp proximal
Tmem51	transmembrane protein 51	Intron