rs27552009 SNP Detail

Summary

• ID
  rs27552009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123046907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATTTCC CCCCTTTACC
  ATCTAACTGG CATCCAGAGT GACAGATTTC CAATTTCCTA ACTTTAAATT GTCCATTTGT
  GAATAAAGAG AAAATGCATA TCAGTCTGCA AGCTCGAACA GCACTGACCT TGGTCTTCAA
  CTCTCCTGTT TCCTAGGAGA CTGCAAAGGG AAGATAAGTG GGGGCATTGT GTATGCAGCC
  Y
  TTGCTGTGTG GGCTTGGAGG TGTTGATGGT GGGCGTCAGG CCATCTGCTC ACACAACTAG
  AGCTGTAGGA AGCAGTGAGA GATGCAGGCC AGCACGCTGA GCCAGAGTGA TTCCCTCAGG
  CCTTGCTGTC CATAGCAGCT GCATGTTCCC CTAGGATGTA GCGACAGCAG GGCTCGGGTG
  GTGGACAACT GTTGGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37744832	NES09202326	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T		T	T	T		C	T	C	C
ss45576072	mCV22631461	ABI	CRAMUS_MOUSE	f	SNP		C					T	T
ss321289757	CHEV_4_122830357	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27552009					SNP	C	C	T	T	C	T	T	T	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37744832	NES09202326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123046907 () rs orientation: forward

Symbol	Name	Function Class
Rr599057	regulatory region 599057	908 bp distal
Rr599058	regulatory region 599058	1971 bp proximal