rs27552008 SNP Detail

Summary

• ID
  rs27552008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123048315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGAACTT GGGGCCTCTG
  CAAGAGTAGT ATATGCTCTT AGACACTGAC CTATCTCTCT GGTCTCCCAA ACTTATATAA
  GTTTAGGATG AACAATTGTA GACCTTTTTT AGCCTAATAA GATGCACTGG GTCATATTCC
  TTTGGGTTTC TGTCTGTTTG TTGGGTTTGT TTAGTTGGCT GTTTGCTGTA GTTTGCATAA
  Y
  CCAGGGGTAG TCTGTTTCTT TAAAGCATGG TTGTTGTTAT TGGTGGTGGG TAAATTTTCA
  TAGGACTTGG TTGGTTCTTT GGGGCTCTTC TGTTTGCCTG TACCCACACT AGCCAACCCA
  ATAGGTTAGG CTGGCTGTCC TGTGAATTCC AGGGATCGCC TGTCTCTGCC CACCCCCCAT
  GCTGGACTAC CATCACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37744831	NES09202259	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	C		C	C	C		T	C	T	T
ss45572056	mCV22631449	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C	C
ss147362140	ENSMUSSNP6668874	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321289759	CHEV_4_122831765	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27552008					SNP	T	T	T	C	C	T	C	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37744831	NES09202259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123048315 () rs orientation: forward

Symbol	Name	Function Class
Rr599058	regulatory region 599058	563 bp proximal
Rr599059	regulatory region 599059	674 bp proximal
Rr599060	regulatory region 599060	938 bp proximal