rs27552003 SNP Detail

Summary

• ID
  rs27552003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123049274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTAACAA AAGCAGAGTG
  ATCTATTTGA TTTGTGCAAG TTGTACATAG TAAAAGGTAA TTCTGAGATA CTACTCAAGA
  TCTATTTGCC ACCAAAGTCC AGTCCTAACA ATATGCAAAT GTCTCTCTTC CTTCCCCCCC
  TTCTTTTCTC CATCCATTCT TCCTTCCCCC CCCCTTCTTT TCTCCATCCA TTCTTCCTTC
  Y
  CCATAAAAGC AGAATACCGC AATGCCTAAC ATACTGCTGA AACAACCTGA TAGACCAAAG
  GCTTGGTCCA TTCAGGTACC TGCAGAGTAT GACTACAACA GGAAACTGAA TCATATGAAA
  AATAGATTAC CTATTATATC TATCAAAGTA TGACTGTCAC CAGCTCTGTG ACCAACAGAA
  GGTGACTTAA TTGCTCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37744826	NES09202214	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	C	C	C		C	C	T	C		T
ss321289764	CHEV_4_122832724	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27552003					SNP	T	T	C	C	T	C	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37744826	NES09202214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123049274 () rs orientation: forward

Symbol	Name	Function Class
Rr599058	regulatory region 599058	146 bp distal
Rr599059	regulatory region 599059	264 bp distal
Rr599060	regulatory region 599060	within coordinates