rs27547601 SNP Detail

Summary

• ID
  rs27547601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138909175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATGCATA CATATATACA TACATATGGA CATACATGCA
  TACATATATA CATACATGTG GACATACATG CATACATACA TACATATGTA CATACATACA
  S
  ACAGACATCT GAACTATTTT AGTAACTTGA CAAGACCATT CATCATAATT AAATGTCTGG
  CAAAAGCAAT TAAGGGGAGG ACTTTGGGGT ACAATACTTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37765629	NES09136638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27547601					SNP	G	G	G	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765629	NES09136638	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138909175 () rs orientation: forward

Symbol	Name	Function Class
Gm16287	predicted gene 16287	1209 bp upstream
Rr603128	regulatory region 603128	1221 bp distal
Rr603129	regulatory region 603129	1065 bp proximal
Rr603130	regulatory region 603130	1784 bp proximal