rs27547405 SNP Detail

Summary

• ID
  rs27547405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138960129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGC CTGGAAGTCC TAGTAGTGTG
  R
  GCTCCTGGTT CTCCCTGGAG TTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37765424	NES09135402	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	A		G	A	A	A		G	G	G	A		G
ss45619375	mCV27565974	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss147668485	ENSMUSSNP1314261	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
ss321380427	CHEV_4_138788733	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27547405					SNP	G	G	G	A	A	G	A	G	G	A	A	A	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765424	NES09135402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138960129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Rr377281	regulatory region 377281			within coordinates
Rr603156	regulatory region 603156			1807 bp distal
Rr603157	regulatory region 603157			75 bp proximal
Rr603158	regulatory region 603158			181 bp proximal
Rr603159	regulatory region 603159			576 bp proximal
Rr603160	regulatory region 603160			1074 bp proximal
Tssr39913	transcription start site region 39913			558 bp upstream
Tssr39914	transcription start site region 39914			694 bp upstream