rs27547399 SNP Detail

Summary

• ID
  rs27547399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138960503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGTGAGA CTGCCCCCCA
  GTGGTCATTG CAAGAAACTG TGTGCTACTG CCATCCAACA AGGTTACCCA AGATTCCCTA
  GTGTCTCCAA AGTTCCTCCA GAGTGGCTTC TGTGGTCATC GGCTTAGGGA CACCCTGGCC
  CGGCTTGGGG ACACCCTGGC CAGGCCATTC TGACTCAGGG GCATGTATTG GTGTCGTCAG
  Y
  GGAAGCCAGA CGTACTGCCA GGGCTTAGGG GCCTATCTGT CTTAGAAGGT CTGAGCTGCT
  TTTCCTGTGG AGAGAAGCTG CCAGTCTCAT CTATCCTCAG AAGTCACTCA AGGTCAGGCT
  TGCTGTAGGA TTGCCAAAGT AGTCACAAGA CGTACCCCAC TTCTGAGAAG AAAGGGCTGT
  GGACACATGT GAGTCCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37765418	NES09135408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27547399					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765418	NES09135408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138960503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Rr377281	regulatory region 377281			within coordinates
Rr603157	regulatory region 603157			within coordinates
Rr603158	regulatory region 603158			172 bp distal
Rr603159	regulatory region 603159			202 bp proximal
Rr603160	regulatory region 603160			700 bp proximal
Rr603161	regulatory region 603161			1939 bp proximal
Tssr39913	transcription start site region 39913			184 bp upstream
Tssr39914	transcription start site region 39914			320 bp upstream