rs27547388 SNP Detail

Summary

• ID
  rs27547388
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138961536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT TTTGTGACTT TTTTAAAGTT
  W
  TGGGGAAGCT AGCAGAAGCC ACCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37765407	NES09135419	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	T	A	T		A	T	T	T		A	A	A	T		A
ss45726558	mCV27565939	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		T
ss147668517	ENSMUSSNP2821711	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
ss321380434	CHEV_4_138790140	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27547388					SNP	A	A	A	T	T	A	T	A	A	T	T	T	T	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765407	NES09135419	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138961536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Rr377281	regulatory region 377281			483 bp downstream
Rr603157	regulatory region 603157			832 bp distal
Rr603158	regulatory region 603158			1205 bp distal
Rr603159	regulatory region 603159			724 bp distal
Rr603160	regulatory region 603160			104 bp distal
Rr603161	regulatory region 603161			906 bp proximal
Tssr39913	transcription start site region 39913			822 bp downstream
Tssr39914	transcription start site region 39914			698 bp downstream