rs27546922 SNP Detail

Summary

• ID
  rs27546922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137834612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGGTGT CTGTATGGTG
  GGTGACAACT CAGATAGAGA CAGTGATTGC TGTGGAGAGC CTCCAGTCTT GTCTCTTTTG
  TGTTCTTACA TTTGAATCCA CCCGTACAAA TCTTGGCTCT GTGTATGCGT GGAGTCTGTG
  GGATGGATCG TAGCTGTTTA ATTGATGAGT GTACTTTTCC TCTTAAAGTC AACAGCAGAA
  R
  CATTACAGCT TCTGGCTTCA TTTCTGGGAG GTCATGGAAG CTGTGCCCAT AGACGGCTGA
  ACTTGGTGAA GGGAGATTAT ATCGTGTCAA AAAATACTGA GTCTGTTCTT TTCCTAAAGG
  CTGCAGGCTC TGAACATTGG CGCTGAGTTC TCTTTCTAGA AAGCCCTCGG CACAGGGCCT
  GTAATAGACA TTTGAAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769542	NES09141065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27546922					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769542	NES09141065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137834612 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602837	regulatory region 602837	358 bp proximal
Rr602838	regulatory region 602838	625 bp proximal