rs27546900 SNP Detail

Summary

• ID
  rs27546900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137837135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAGGGG AAGAAAGACC
  GGGTGAAAAG ACTGGACCAT GCCTTCTGTA AGGCCTGTGC CTATTCTCTG TCAGGCTCCC
  CACGGACTTC AGTAGTAAGG AAAGATGACT CTGGTGAAGG AGGCAGGTCT TCTTTTGTCT
  CAGTGTGTTG TCATAGTCAT GGATGTGTTG GCTTTTCTGC CAGTGGGATT CATAAACAGC
  Y
  ACACATGGAA CTTAACTGAG CTAAGCTGAA GGAGTCTGCA TGGAACTCAT GGCAGGCCTG
  AGTCACTGAA AGTCACCAGA GATGGCCGCT GAGGGTCCAT TGACAGGAAC AATCCTGGGG
  TCCACATGAC GAAAACCTGA AGGCAAAGGG AATTTTTACT GTTGCTGTCT GCTCTAGGCG
  TCGGTGAAAC TACAGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769520	NES09140924	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C		C	C	C	C	C	C	C	T	C
ss45573559	mCV24054678	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss147633013	ENSMUSSNP6551729	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27546900					SNP	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769520	NES09140924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137837135 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602837	regulatory region 602837	1496 bp distal
Rr602838	regulatory region 602838	1877 bp distal