rs27546778 SNP Detail

Summary

• ID
  rs27546778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137856964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTTATG TAATGCCCCA
  TAGGCTAGTC TGATAGAAGC ATTTTCACAG TTAAGGGTCC CTCTTCCCAA AGCCTAGCTT
  GTGTCAGGTT AACATAAAAC TAGCGTGCAT ATAAAGTTAG CCCTGTGGTG CCGTGGTGTA
  TGTGCTATGT GATTAGATAT AGCTTCTCAT GGAGTTGACT GAACCCAAGC AATACGTTAC
  R
  GAGAAGAAAC AGGTCTGTTC TCATGCCTGT GCCGTGTGTT TCAGTAATTG AAATAGGATT
  CTTTTTATAA CATGTGTATC TTCTCAACGT GTGTCTGCTG AGCAGTCTGT CAGTAGTTGA
  GTAATACTAT CTTTCCCTTA TAGTAAGGAC CTCATTTTTA CAAAACTGGG GCTGGAGAGA
  TGGCTCGGTG GCTGAATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37769397	NES09140383	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27546778					SNP	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769397	NES09140383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137856964 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602841	regulatory region 602841	413 bp proximal
Rr602842	regulatory region 602842	600 bp proximal
Rr602843	regulatory region 602843	1601 bp proximal