rs27546776 SNP Detail

Summary

• ID
  rs27546776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137857249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGTGTGT CTGCTGAGCA
  GTCTGTCAGT AGTTGAGTAA TACTATCTTT CCCTTATAGT AAGGACCTCA TTTTTACAAA
  ACTGGGGCTG GAGAGATGGC TCGGTGGCTG AATTTGGGCG CTCTGGAAGA GCAGTCAGTG
  TAGTAGTAGT TAAAGCTTCC CCTTAACACC ACCAATAAGT GGTGACATCA GTGAGGAAAA
  Y
  GGAGGGACAG ACAGCAGCAG TCCTCATGCT CCTGCCACCT GGGAGAGGTC TCTGAGTGCC
  CCTTCCAGTG TGTGCAGCCC CGTCCTTGTA TGTTCTTGCC ATTGTTGAGC CCTTGAGCTC
  CCCCTACTCA GCTCCCTCTT CAGTCTTTCT GTCTTACATG AATGTGTCTG TTCATGATGC
  ATGTATTCAA CATGCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37769395	NES09140385	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	C
ss147633667	ENSMUSSNP205369	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27546776					SNP	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769395	NES09140385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137857249 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602841	regulatory region 602841	128 bp proximal
Rr602842	regulatory region 602842	315 bp proximal
Rr602843	regulatory region 602843	1316 bp proximal