rs27545950 SNP Detail

Summary

• ID
  rs27545950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137394834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATTCCTC AGATCTCTCC TGAGACCACA GGGCCCCAGC
  ACAGGCTTGG AACAGCCCCA GCCCCAGCCC CAGCTTCCCT TTTGTCCGCT GCCTTGACAG
  S
  AGCCTGACCG AGTTCTGTTT TCTATTCTGC CCTCCCAGCA GGGCTGGGGA CCAGCTCCTG
  TGAATACAGG AGGATCCTTC GTGATCCACT GCCTTTTCCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss37771469	NES09133567	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27545950					SNP	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771469	NES09133567	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137394834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rap1gap	Rap1 GTPase-activating protein			Intron
				Noncoding-Transcript-Variant
Rr602670	regulatory region 602670			1935 bp distal
Rr602671	regulatory region 602671			37 bp proximal
Rr602672	regulatory region 602672			913 bp proximal
Tssr44130	transcription start site region 44130			1164 bp upstream