rs27545949 SNP Detail

Summary

• ID
  rs27545949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137394993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GCTGTGCCTC TTAGTGGCTA
  R
  CATCTCTGGG AAGCTGTTGC TGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37771468	NES09133568	PERLEGEN	MM_PANEL2	f	SNP	A		A				A	A		G
ss45696151	mCV24784051	ABI	CRAMUS_MOUSE	f	SNP		G		A	G
ss147615585	ENSMUSSNP4358938	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
ss321366198	CHEV_4_137223597	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27545949					SNP	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771468	NES09133568	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137394993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rap1gap	Rap1 GTPase-activating protein			Intron
				Noncoding-Transcript-Variant
Rr602671	regulatory region 602671			within coordinates
Rr602672	regulatory region 602672			754 bp proximal
Tssr44130	transcription start site region 44130			1323 bp upstream