rs27544927 SNP Detail

Summary

• ID
  rs27544927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136862126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCAGCCT GGGCTACAGA
  AAACATTAAT TCAAAACAGT AAATGGAGAT CTGTAACCTG TAACAGTCGT TGGCAGTTTT
  AAATAGACTT TCCCAGGCTC CTCTCATGCA TATTCATAGG CACACATACA TAAGCTTGAA
  TTAAGTACTG GAATTTCCTG CCTCTCTGTT TTCCTTTCTT CTTTAGTATA GAAAACTCAA
  Y
  GTGTATAAAA ATGGAGAAAA CAGCCTGAGA ACTCCAGTAC ATGTTTGAGC CTTCTTTCTT
  CACATCCAGT CACACAGGCT GTGGTGTGAC TGCCCCGTGA GCCACGTGAA CCCCCAGTGG
  AGGATGCTGT GCGCACCTGG GCACCTCAGG CAGCTTCCTC TGTCCTCCCC CTAAATCCAC
  CGACTAATTC AAGCACCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37773647	NES09144573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544927					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773647	NES09144573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136862126 () rs orientation: forward

Symbol	Name	Function Class
Rr602550	regulatory region 602550	407 bp distal
Rr602551	regulatory region 602551	1007 bp proximal
Rr602552	regulatory region 602552	1627 bp proximal