rs27544920 SNP Detail

Summary

• ID
  rs27544920
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136862888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG ATGCCTGAAA CCCCAAATAC
  K
  AAGTCAACTC ATGGAACTTA CAAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37773640	NES09144580	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	G		T	T	G	T		G
ss147595618	ENSMUSSNP6098941	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				G
ss321361519	CHEV_4_136691492	CHEVERUD	SCREENING_POP	f	SNP									G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544920					SNP	T	T	G	G	G	G	G	G	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773640	NES09144580	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136862888 () rs orientation: forward

Symbol	Name	Function Class
D4Mit68	DNA segment, Chr 4, Massachusetts Institute of Technology 68	1545 bp proximal
Rr602550	regulatory region 602550	1169 bp distal
Rr602551	regulatory region 602551	245 bp proximal
Rr602552	regulatory region 602552	865 bp proximal