rs27544917 SNP Detail

Summary

• ID
  rs27544917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136863009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGGTGT GGGGACCATC
  CTCGCACCTG CCTCATGGGT CACTAATGTC AGAGGAGTGA TGCCTGAAAC CCCAAATACT
  AAGTCAACTC ATGGAACTTA CAAGGAATTT GTGGTATCAT TAAATAATTT ATTAAGCACG
  AATATTTTGA AGTAATGAAT TTCTTCATTG CTCATTGACT CAGTTGAGTC AGTAGAACAC
  R
  TGGGATTGTT TATAGTCTTT CAAGCGACAA TAAGTTGCAC TATGGTTTTT AGGGAAACCG
  AGTCCTGGCT TTAGAGGAGG ATCCAGCTAC CCTCAGCAGA TGCTCTGAGG AGGTGCGCAG
  AGCCCCAGAC CCATGGATGG ACAGGAGCCT GCTCGGGATG TCGCCAGACT CATCAGCCTT
  GTCTTGGCTT GGACAAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37773637	NES09144583	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544917					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773637	NES09144583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136863009 () rs orientation: forward

Symbol	Name	Function Class
D4Mit68	DNA segment, Chr 4, Massachusetts Institute of Technology 68	1424 bp proximal
Rr602550	regulatory region 602550	1290 bp distal
Rr602551	regulatory region 602551	124 bp proximal
Rr602552	regulatory region 602552	744 bp proximal