rs27544908 SNP Detail

Summary

• ID
  rs27544908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136863878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGGCC AGAGTTGGGA
  ATTCTGGAAG CTGGGCAGCC TTAGGCAAGG CCACACAGCT CAGCCATCTG CTCTACAAAA
  CTTTCTGCCT GTGACCCTGG CAGTGAGTTC CCACAAAAAC ATGTACCACC CCCAGGAGGT
  TATGAGAATG GCTAGGCTTG CACAAGGTTC CCATCCTGTC ACTAAGCAGT GAGGCACCAC
  Y
  GATGTCTTCT TGCTGTCTAG CTGCCGTGAG TATGACTCAG AGTCTCACTC GGTCTTGGCT
  AGCAAGTACA GAGTCCTACA TTTACAAGGC ATCTCCGACC ATGTCTCCAT CTTCAGGCAG
  GCTGGACATG GCTGTCTTGT TCTATGAGGA TCAGCTCTGA CTTTTAAAGG GCTTCTTGCC
  CGCTGCTGAA AGCTGTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37773628	NES09144592	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544908					SNP	T	T	T	C	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773628	NES09144592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136863878 () rs orientation: forward

Symbol	Name	Function Class
D4Mit68	DNA segment, Chr 4, Massachusetts Institute of Technology 68	555 bp proximal
Rr602551	regulatory region 602551	346 bp distal
Rr602552	regulatory region 602552	within coordinates