rs27544851 SNP Detail

Summary

• ID
  rs27544851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136867902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGGTGC AGCAGCCAGG
  AGGTCCAAGA GAGAGCAGTC GGTAGGACCA AGTTGGATTA TATCGGGAAG GGCAGCTCGT
  CCCCTGAACT GGAGTGTAGG GTAGTGGGTG AGGTATGCCA GCCATACTGT CACAGGTGAG
  GGATACAGGG AGGACCTGGG AGAGTCACTG GTCCTCCCTG CTGCTCCCTG AACACAGTGA
  R
  AGATGTGCCC ACGGGAATAG AAGGTCCTGA TGGTGTCCGA CAGGTGGGGA TGCCTTAACC
  TAAGCCACAG AGAGGCTTCT CCATCCTCCC TCCCTGGGGG CTCACAGAAG AGGAAGTCAT
  CAGGGAACCA AGTTCCTGGA CGTCCAGATG TTTCTTTGTA GCTCAGCTGC ACCAAGCAAA
  TGCCACCTTT CCCCCCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37773570	NES09144427	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	G	A	G
ss147595848	ENSMUSSNP4323290	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544851					SNP	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773570	NES09144427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136867902 () rs orientation: forward

Symbol	Name	Function Class
Gm31762	predicted gene, 31762	within coordinates
Rr602553	regulatory region 602553	1617 bp proximal
Rr602554	regulatory region 602554	1876 bp proximal