rs27544839 SNP Detail

Summary

• ID
  rs27544839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136868896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCGCAC CCCTCCCGGC
  CCCTGCCACT CACCTTGGTC TGGGATGGGT CATCCACAGA CCTCACCACC CTCTTGCCAG
  GGTCTTTGCA GCACAGCACC ATCAGGGGCA TCAGTTGCTC GTATGCTGGC AGAGGGTCCT
  AGAACAGAGA TCACATCGAT CACCCCTTTG ATGGTGAGCC TTGAGCTTTG AGACCCATCC
  Y
  GGCTCAAGGG GCGGGAACTG AACATTGTCA CTCAAGGGAT GGTGGCTGTC TCTGGCCCAT
  CATGGTATCC TCTCTTAAGA CTCTGCACAG TTACATCGCA CTGACTTGTG TGCCTATTTA
  CATATGTACA TATGAGTGTG AGCGTGGAGG TATGTGCACA TGTGCACACA TACGAATGAG
  GGCCAGTGCT CAATGCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37773558	NES09144393	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	T	T	T	T	C	T	T	T	T
ss147595934	ENSMUSSNP2685634	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27544839					SNP	T	C	C	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773558	NES09144393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136868896 () rs orientation: forward

Symbol	Name	Function Class
Gm31762	predicted gene, 31762	within coordinates
Rr602553	regulatory region 602553	623 bp proximal
Rr602554	regulatory region 602554	882 bp proximal