rs27544830 SNP Detail

Summary

• ID
  rs27544830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136870155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACCAGA GAGAGATGAG
  GGTGTCTCCC TGTTCCCACC GCCTCTGGGG CCCCTGCCTG GGCTCGAGCG CTAAGATGGA
  GTGGACAAGA AGACAGTCTT ATTTCTGAGA GTTCCTCGTG GCCACCCTCA GCGTAGCTGG
  AGACCCTGCC TCCACAGAAC CTGCCACCTC TCTGTGCCCA ACACAGCTGT CCTCAGACTG
  Y
  GTCTTTCAAG ACAGTTGTCC ACACTAGGGC CTTCCAAGCT GGTCTGTTTT CTCTTCATAA
  TACCGGGGGT CAAAACCCAC TAACTCGATG CCATGGCTCA CTAATAGTCT GAGAGATACA
  GCTTGATAAA CACTGAGCCA AGGAAGCCAC AGGGGGAAAT TGAGAGTCAC TGAGCCTTCT
  CTCTCCTCCA ACTCAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37773549	NES09144357	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C	C	C	C	C	C	C	C	C
ss147596014	ENSMUSSNP6758290	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544830					SNP	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773549	NES09144357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136870155 () rs orientation: forward

Symbol	Name	Function Class
Gm31762	predicted gene, 31762	386 bp upstream
Rr602553	regulatory region 602553	378 bp distal
Rr602554	regulatory region 602554	within coordinates