rs27544642 SNP Detail

Summary

• ID
  rs27544642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138591946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC CCTACCACAA AGATGAGTCA
  R
  GCATTGAAAA AGGTCACTTG GGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37766665	NES09147825	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	A	G	A	G	G	G	A	G
ss45602090	mCV23435509	ABI	CRAMUS_MOUSE	f	SNP		G	G				G		A
ss147659234	ENSMUSSNP2743673	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544642					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766665	NES09147825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138591946 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Pla2g5	phospholipase A2, group V	1162 bp upstream
Rr398630	regulatory region 398630	1836 bp upstream
Rr603035	regulatory region 603035	1836 bp proximal
Rr603036	regulatory region 603036	1957 bp proximal
Tssr39889	transcription start site region 39889	1058 bp downstream
Tssr44191	transcription start site region 44191	1144 bp upstream
Tssr44192	transcription start site region 44192	1030 bp upstream