rs27544638 SNP Detail

Summary

• ID
  rs27544638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138593582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT CCCGTGGAGA TGTAGCCAAC
  R
  GGACCCATCC CCCCATCTTG GTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37766661	NES09146460	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A	A	A		G	G	A	A		A
ss45637040	mCV23435231	ABI	CRAMUS_MOUSE	f	SNP		G	G				A
ss147659259	ENSMUSSNP1267728	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
ss321377653	CHEV_4_138422186	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544638					SNP	G	G	G	A	G	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766661	NES09146460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138593582 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Rr398630	regulatory region 398630	200 bp upstream
Rr603035	regulatory region 603035	200 bp proximal
Rr603036	regulatory region 603036	321 bp proximal
Rr603037	regulatory region 603037	1091 bp proximal