rs27544636 SNP Detail

Summary

• ID
  rs27544636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138593748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGGTTT TGTTCCCGTG
  GAGATGTAGC CAACGGGACC CATCCCCCCA TCTTGGTTTT CGGAGGCTTC ACTCACTGTT
  GGCATGGCTC TCTAAACAGT ACTTAAATTT TGCTTTCAGT TCAGTAAGTA CCATTGCCCC
  TCATTTAAGT GAATTTTGAT TATTTTCAAA GCTGTAACAT ATGAAGTTAA GTTGTGCAGC
  K
  TTGCTATGGT AGCTTATGCT GTGTTTCCTA TGTTGTGGCC ACTCTGGAGT TTTCCTTGCC
  TGTTTTATTT TGCTTTCCAC TTAGGAAACT TATGTGGTGA AGATCACAGC CAATCTTCTG
  TTAACCAGCG CTCTACTTAC ATGCAGTACC TGAAGCAACC AGAAGAGGGC ATCGGATCAC
  CAGAGAACTG AAATCAGTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37766659	NES09146462	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544636					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766659	NES09146462	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138593748 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Rr398630	regulatory region 398630	34 bp upstream
Rr603035	regulatory region 603035	34 bp proximal
Rr603036	regulatory region 603036	155 bp proximal
Rr603037	regulatory region 603037	925 bp proximal