rs27544633 SNP Detail

Summary

• ID
  rs27544633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138594246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCA AGAATACAGA GACAGGAGAC
  Y
  GTATCAATGT GCATGCAGAC ACCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37766656	NES09146420	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T		T	T	T		C	C	T	T		T
ss45691301	mCV23435224	ABI	CRAMUS_MOUSE	f	SNP		C	C				C	T
ss147659278	ENSMUSSNP1188928	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss321377656	CHEV_4_138422850	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544633					SNP	C	C	C	T	C	T	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766656	NES09146420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138594246 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Rr398630	regulatory region 398630	164 bp downstream
Rr603035	regulatory region 603035	79 bp distal
Rr603036	regulatory region 603036	322 bp distal
Rr603037	regulatory region 603037	427 bp proximal