rs27544631 SNP Detail

Summary

• ID
  rs27544631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138594360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAGTAT TTTGCCCTGG
  GTGACTCCAT TTACACAACA AGCATCATTT AGTTCCATTT TGATCAAGAA TACAGAGACA
  GGAGACCGTA TCAATGTGCA TGCAGACACC ACCCTGTCCA GCACCAGCCA GGAGACACAG
  ACAGATAATA ACTTGTTCCC AAAAATTAAA AACATACTTA CAGGTCAATG TGTGAATGTT
  Y
  AAACCCAAAT GAGAAACTGA CCAAACACAC CAAAATAACA GAGGCCATGG CATTTTCTTC
  TGGGCTCCAT AAGAAGAATA CCTAATACTG AAATATCAGT GGTCCCGCAA ACCTGTTCTC
  CAGCTACCTA GCGTGTGCGT GTCAAAGGAC CAATAGACAG GGAGTGCCCA ACCATCTCAG
  GGGCTTTGGC TCAGCACGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37766654	NES09146424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544631					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766654	NES09146424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138594360 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	within coordinates
Rr398630	regulatory region 398630	278 bp downstream
Rr603035	regulatory region 603035	193 bp distal
Rr603036	regulatory region 603036	436 bp distal
Rr603037	regulatory region 603037	313 bp proximal