rs27544627 SNP Detail

Summary

• ID
  rs27544627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138595309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGACCT GTGGATCTGT
  AGCCATTCAA TAAACTCAGG CATTATGGAA GACACAGGTC TGTCCGTCTA CGTTTCTGGT
  AGACCACGCT CATGACAGCG ACTCTGAAAT TTAAATTAAA AATTCTATGT GAAAGGGCAG
  CTCCCGATTA CAGACTGGAC ACGAGGGAAG AAAATGGAGG TAGTCGGGCT TTGCTGAGAA
  Y
  GATTAAAGGA AGAACATACC ATTCTATTAA AGCCTAACTC TTTGTGCATG CACACATGTG
  CACATACACA CATGCACACA TGTGCACATA CACACATGCA CACATGTGCA CATGCACATA
  CATGTACACA TGTGCACATA CACAGGCACA CACACGTGCA CGCATGTGCA CATACACACG
  TGCATGTACA CATGCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37766650	NES09146432	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544627					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766650	NES09146432	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138595309 () rs orientation: forward

Symbol	Name	Function Class
Gm32930	predicted gene, 32930	147 bp downstream
Rr398630	regulatory region 398630	1227 bp downstream
Rr603035	regulatory region 603035	1142 bp distal
Rr603036	regulatory region 603036	1385 bp distal
Rr603037	regulatory region 603037	615 bp distal